Bioperl is set of Perl Modules for bioinformatics. It contains objects for Sequences, features on Sequences, and other important bioinformatics attributes.
Release Notes: Many minor bugs were fixed. DBMS support was enhanced in Bio::DB::SeqFeature.
Release Notes: This is the first core release in the 1.6 series, and the first stable release after 5 years of development releases.
Release Notes: Many bugfixes and enhancements were made, including support for parsing the latest NCBI BLAST text format changes, PAML 3.15 support, a Taxonomy (Bio::Species) overhaul, a Bio::Map overhaul, a Bio::SearchIO speedup, the introduction of a Build.PL installation system, and fixes for some memory leaks in Bio::Tree. This version requires Perl 5.6.1 or later.
Release Notes: This release fixes broken code in the 1.5.0 release, deals with NCBI RemoteBlast changes, adds better BLAST parsing, and respects the 1.4.0 API.
Release Notes: This release includes several new modules and some code cleanup since the 1.4.0 branch. It is the initial code that will lead to the 1.6 stable branch release.