Projects / Genpak

Genpak

Genpak is a small set of utilities designated to process DNA, RNA, and protein sequences in a very Un*x-like manner. This way, Genpak programs can be combined using pipes and redirections, as well as easily incorporated into CGI scripts. The utilities include a program for calculating GC content, Tm, translating DNA/RNA sequences into protein sequences, quick sequence retrieval, random sequence generation, and finding promoter sequences using a Hertz matrix.

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Recent releases

  •  06 Jun 2001 14:28

    Release Notes: Two new utilities were added. One of them adjusts codon usage of an ORF to reflect an optimal codon usage of a group of genes, and the other one is a tool for calculating the codon usage deviation from a population of genes. Some minor bugs were also fixed.

    •  15 Feb 2001 17:18

      Release Notes: This release fixes the broken gp_tm, the partly broken gp_primer, and other minor problems.

      •  12 Feb 2001 17:29

        Release Notes: This release adds a program for predicting oligonucleotide stem-loop structures and dimeres.

        •  09 Feb 2001 21:25

          Release Notes: Major bugfixes, code cleanups, and some new features.

          •  17 Sep 2000 18:46

            Release Notes: Many bugs have been corrected, some utilities have been rewritten, and three new programs have been added.

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