mkESA is a program for constructing enhanced suffix arrays (ESAs) from biological sequence data. The program is based on an implementation of Manzini's lightweight Deep-Shallow algorithm, which can also utilize multiple CPUs/cores for extra performance. The generated output is compatible with the output of mkvtree from the Vmatch package.
|Operating Systems||UNIX-like OSs|
Release Notes: This release no longer crashes if the input sequence ends in a wildcard character.
Release Notes: A predefined alphabet was added for mixed DNA/RNA data. Minor bugfixes and changes have been applied. The configure script now automatically sets the runtime linker search path (rpath).
Release Notes: Initial release on Freshmeat.