Chnorm is a simple command line utility for setting the owner, group, and the mode of given files and directories on a per file/per directory basis, recursively. It is especially useful if you often copy files with brain-dead permissions from filesystems not supporting the Unix permission scheme. It detects executables based on their contents and sets their permissions accordingly.
Autojump is a tool that acts as a complement to cd: it makes navigating your filesystem a lot faster. It works by automagically maintaining a database of the directories you use the most from the command line, and allows you to jump back and forth between them, by typing just a few letters of the name of the directory you want to jump to. It works for Linux, Mac, and Cygwin under Windows.
gcp (Goffi's CoPier) is a command line file copying tool, loosely inspired by cp, but with high level functionality like a progress indicator, the ability to continue copying multiple files even when there is a problem with one of them, and the use of a journal to track successful copying. File names can be fixed to ensure compatibility with the target filesystem. If you launch a copy operation when another is already running, the files are added to the first queue to avoid hard drive thrashing. You can keep track of files you have copied, and re-copy them later. gcp is approximately option-compatible with cp.