Basilic is a bibliography server for research laboratories. It automates and facilitates the diffusion of research publications over the Internet, automatically generating Web pages from a publication database. Each publication has an associated Web page, which provides downloads and additional documents (abstract, images, BibTeX). Index pages are also created, including a search engine with several options for results display. New publications can be added to the database in an instant.
Triceps is an innovative embeddable Complex Event Processing (CEP) system. It can be thought of as an in-memory database driven by triggers, or a data-flow machine working on a stream of events, or a spreadsheet on steroids. The major architectural advantages of Triceps include the direct use of procedural logic (as opposed to all-SQL systems), support of both compiled and general scripting languages (C++, Perl), light weight, and easy extensibility.
TM++ is an embedded, portable, persistent Topic Maps engine. It is designed to work according to the ISO standards for TMDM 1.0 and XTM 1.0/2.0 on Windows and most POSIX-compliant operating systems like Unix and Linux. It has interfaces for C++, ALLEGROCL, CHICKEN, CLISP, CFFI, C#, Guile, Java, Lua, Modula 3, Mzscheme, Ocaml, Octave, Perl, PHP4, PHP5, Pike, Python, R (aka GNU S), Ruby, Lisp S-Expressions, Tcl, Common Lisp/UFFI, and XML.
The Data Mine is a search engine designed to make a more useful interface available to users. It is designed around human-computer intelligent interaction considerations. It divides the screen into two halves. One lets you find all the instances of your query's keywords, and the other lets you look through a highlighted version of the results you choose.
The Skeleton Engine is a starting point for creating a MySQL Storage Engine. It comes with everything you need to write a pluggable engine. Autoconf, an initial framework, and scripting tools are all provided. The Skeleton Engine has been the starting point for the PBXT, Nitro, Memcache, AWS, HTTP, and many other engines.
ColdStore is a gigabyte-scale persistent object store which mmap()s objects into a file (for persistence), can allocate objects in a minimal working-set of pages (for speed), permits library versions to change without a rebuild of the store, permits application checkpoint/restart. ColdStore might be used to replace a database, cache highly structured objects, act as an OODB, make STL persistent, act as a Document Store for XML/SGML/HTML, create a MUD. Future projects include a virtual machine toolkit, ports of several languages, VM and byte-interpretive language workbench.
FramerD is a semi-structured object database integrated with a Scheme-based scripting language which supports multi-lingual programming (with pervasive Unicode), a stable module system for programming in the large, distributed applications (via an extensible RPC protocol), non-deterministic (PROLOG-like) evaluation for search and set operations, multi-threaded program execution, extensive tools for text and language analysis, built-in HTML/XML/MIME parsers, and intuitive (CGI- and FastCGI-based) Web scripting. The built-in object database robustly supports millions of objects and indexed access to those objects, both through disk files and networked servers.
The NCBI C++ Toolkit provides portable libraries and applications for assisting genetic science. These include libraries for networking, SQL and BerkeleyDB access, CGI and HTML handling, ASN.1 and XML handling, sequence alignment engines, sequence retrieval engines, BLAST database engines, FLTK and OpenGL graphics toolkits, and basic system utilities.