ProActive is a Java library for parallel, distributed, and concurrent computing as well as mobility and security in a uniform framework. It provides a comprehensive API and a graphical interface and is based on an Active Object pattern, a uniform way to encapsulate a remotely accessible object, a thread as an asynchronous activity, an actor with its own script, a server of incoming requests, a mobile and secure agent, and a component with server and client interfaces. It simplifies the programming of applications distributed over a LAN, clusters, an intranet, or Internet GRIDs.
HapCluster++ is a software package for linkage disequilibrium mapping using coalescent theory. It is based on a Bayesian Markov-chain Monte Carlo (MCMC) method for fine-scale linkage-disequilibrium gene mapping using high-density marker maps. HapCluster++ is a C++ implementation of the method described in the paper "Fine Mapping of Disease Genes via Haplotype Clustering" by E.R.B. Waldron, J.C. Whitaker, and D.J. Balding. Genetic Epidemiology. 30: 170–179. (2006).
SNPfile is a library and API for manipulating large SNP data sets with associated meta-data, such as marker names, marker locations, individuals' phenotypes, etc. in an I/O efficient binary file format. In its core, SNPfile assumes very little about the metadata associated with markers and individuals, but leaves this up to application program protocols.
Diffusion Tensor Imaging (DTI) is a magnetic resonance imaging method that can be used to measure local information about the structure of white matter pathways within the human brain. Combining DTI data with the computational methods of MR tractography, neuroscientists can estimate the locations and sizes of nerve bundles (white matter pathways) that course through the human brain. DTI-Query allows neuroscientists to place and interactively manipulate box-shaped regions (or volumes of interest) to selectively display pathways that pass through specc anatomical areas.
Cell Electrophysiology Simulation Environment is a framework to perform electrophysiological simulations. It can, for example, simulate cardiac myocyte electrical activity. It is useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
OsiriX is an image processing software dedicated to DICOM images produced by medical equipment (such as MRI, CT, PET, and PET-CT) and confocal microscopy (LSM and BioRAD-PIC format). It can also read many other file formats: TIFF, JPEG, PDF, AVI, MPEG, and Quicktime. OsiriX is able to receive images transferred by DICOM communication protocol from any PACS or medical imaging modality. OsiriX has been specifically designed for navigation and visualization of multimodality and multidimensional images.