Diffusion Tensor Imaging (DTI) is a magnetic resonance imaging method that can be used to measure local information about the structure of white matter pathways within the human brain. Combining DTI data with the computational methods of MR tractography, neuroscientists can estimate the locations and sizes of nerve bundles (white matter pathways) that course through the human brain. DTI-Query allows neuroscientists to place and interactively manipulate box-shaped regions (or volumes of interest) to selectively display pathways that pass through specc anatomical areas.
E-Cell System is an object-oriented software suite for modelling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components, driven by multiple algorithms with different timescales, to coexist. The core library is written in C++ with a Python binding, and frontend software uses Python.
EDFbrowser is a multi-platform viewer for EEG, EMG, and ECG storage files. It supports the EDF, EDF+, BDF, and BDF+ file formats. It supports montages, annotations, precise measurements by using crosshairs, and a zoom function by drawing a rectangle with the mouse. It shows signals from different files at the same time. It includes a built-in EDF/EDF+/BDF/BDF+ to ASCII converter, a built-in Nihon Kohden to EDF+ converter (including annotations), a built in EDF+D to EDF+C converter, a BDF(+) to EDF(+) converter and a built-in EDF/EDF+/BDF/BDF+ compatibility checker.
Evolving Games for Unnatural Intelligence is a Java package for unsupervised machine learning based on Evolutionary Game Theory on directed graphs. It is able to segment data without any previuos information on the number of segments. It has no GUI, but implements generalizations of the original method proposed by Li, Chen, He and Jiang in the arxiv paper "A Novel Clustering Algorithm Based Upon Games on Evolving Network", published on 30 Dec 2008.
GENESIS (short for GEneral NEural SImulation System) is a general purpose simulation platform that was developed to support the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, simulations of large networks, and systems-level models. It was developed as a research tool to provide a standard and flexible means for constructing structurally realistic models of biological neural systems.
ImageJ is an image processing program inspired by NIH Image for the Macintosh. It can display, edit, analyze, process, save, and print 8-bit, 16-bit, and 32-bit images. There are modules for biology, astronomy, nuclear medicine, physics, and more. If you can take a picture of something, whether with a microscope, a telescope, an oscilloscope, an xray machine, or a scanner, then this program will let you enhance, manipulate, and measure the results.