Extrema, originally developed in the fields of nuclear and particle physics, is a powerful visualization and data analysis tool that enables researchers to quickly distill their large, complex data sets into meaningful information. Its flexibility, sophistication, and power allow you to easily develop your own commands and create highly customized graphs.
fsc2 is a program for controlling spectrometers. Experiments are done by interpretation of scripts written in a simple language, EDL. Devices are handled via modules in order to allow easy integration of new devices. More than 50 devices are supported, connected via serial port, GPIB, LAN, or USB as well as data acquisition cards, etc. The state of an experiment can be remotely monitored via a built-in Web server.
gfit analyzes data using models. gfit lets the user create a model for virtually any type of system using a minimal amount of computer code. It is particularly useful for studying various systems in biophysics, biochemistry, and cell biology. The interface for gfit models specifies relationships between input and output variables in a rule-based fashion. It provides flexibility and allows the user to reuse same models for many related problems.
The purpose of the glideinWMS is to provide a simple way to access the Grid resources. To achieve this without reinventing the wheel, glideinWMS is a Glidein-based WMS (Workload Management System) that works on top of Condor. Once setup, final users can submit regular Condor jobs to the local queue and the glidein factory will provide the computing resources behind the scenes. From the final user point of view, the Condor pool just magically grows and shrinks as needed.
iloog is a Gentoo-based live CD targeted mainly at students and scientists. It features UnionFS filesystem support that enables you to write everywhere on the LiveCD and install extra packages, a graphical X environment through the Fluxbox window manager, many programming editors and IDEs, and a plethora of scientific applications, including Octave, Namd, Merlin, and full (La)TeX support.
iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored for when some molecules are present only in very low copy numbers as is the case in living cells. The SBML-based software computes statistical measures such as means and standard deviations of concentrations within a given accuracy using the analytical system size expansion. The result of iNA’s analysis can be tested against the computationally much more expensive stochastic simulation algorithm.
jHepWork (jWork) is an environment for scientific computation, data analysis, and data visualization for scientists, engineers, and students. The program is fully multi-platform (written in Java). Programs can be written in the Java, Jython/Python, and BeanShell scripting languages. Matlab/Octave is supported for symbolic calculations. The program can be used to display data and functions in D and 3D. It comes with a friendly IDE and a code assist.
libquantum is a C library for the simulation of quantum mechanics, especially for quantum computing. It provides an interface for a quantum register and for all important quantum operations. An efficient model for decoherence allows an analysis of quantum computation in a realistic environment.
The mctdhtools project aims to provide a set of routines for easily reading and manipulating the output of the Heidelberg MCTDH code. Its goal is to allow a new user to quickly get started with writing custom analysis programs, and to allow more experienced users to write small, clean, and testable analysis programs, something that seems incompatible with the Fortran-77 code of the Heidelberg MCTDH package.