Blender is a free 3D animation studio. It includes tools for modeling, sculpting, texturing (painting, node-based shader materials, or UV mapped), UV mapping, rigging and constraints, weight painting, particle systems, simulation (fluids, physics, and soft body dynamics and an external crowd simulator), rendering, node-based compositing, and non linear video editing, as well as an integrated game engine for real-time interactive 3D, and game creation and playback with cross-platform compatibility.
Asymptote is a powerful descriptive 2D and 3D vector graphics language for technical drawing, inspired by MetaPost but with an improved C++-like syntax. It provides for figures the same high-quality level of typesetting that LaTeX does for scientific text. Asymptote is a programming language as opposed to just a graphics program. It can exploit the best features of script (command-driven) and graphical user interface (GUI) methods. High-level graphics commands are implemented in the language itself, allowing them to be easily tailored to specific applications.
graphviz is a set of graph drawing tools and libraries. It supports hierarchical and mass-spring drawings; although the tools are scalable, their emphasis is on making very good drawings of reasonably-sized graphs. Package components include batch layout filters and interactive editors for X11, Java, and a TCL/tk extension. The batch filters can be configured as a web visualization service (using GIF and click-maps). Typical applications include display of finite state machines, software diagrams, database schemas, and communication networks.
GNU TeXmacs is a free wysiwyw (what you see is what you want) editing platform with special features for scientists. The software aims to provide a unified and user friendly framework for editing structured documents with different types of content: text, mathematics, graphics, interactive content. TeXmacs can also be used as an interface to many external systems for computer algebra, numerical analysis, and statistics. New presentation styles can be written by the user and new features can be added to the editor using Scheme.
PasTmon (Passive Application Response Time Monitor) passively monitors your application servers, measuring and reporting user response times, throughput and congestion. It currently works with HTTP, telnet, rlogin, rsh, FTP (control channel), SMTP, POP3, and IRC. Measurements are recorded in a PostgreSQL database and are presented graphically via a PHP Web front-end using R statistical analysis scripts to create the plots.
Armadillo is a C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. The API is deliberately similar to Matlab's. Integer, floating point, and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS numerics libraries. A delayed evaluation approach, based on template meta-programming, is used (during compile time) to combine several operations into one and reduce or eliminate the need for temporaries.
Pybliographer is a tool for managing bibliographic databases. It supports several bibliography formats (BibTeX, Refer, Medline, ISI, Ovid) and can be used for searching, editing, reformatting, etc, through its nice graphical interface for GNOME. Due to its nature, it can be extended to many uses (generating HTML pages according to bibliographic searches, etc). It is provided with sample scripts.
nut is nutrition software to record what you eat and analyze your meals for nutrient composition. The database included is the latest USDA Nutrient Database for Standard Reference. This database contains values for vitamins, minerals, fats, calories, protein, carbohydrates, fiber, etc., and includes the essential polyunsaturated fats, Omega-3 and Omega-6. Nutrient levels are expressed as a percentage of the Daily Value, the familiar standard of food labeling in the United States, but also can be fully customized. Foods can be added from recipes or food labels, and nutrient intake can be graphed. The program is completely menu-driven and there are no commands to learn.