FreeFuzzyTime is a time reasoner based on Fuzzy Temporal Constraint Networks (FTCN), which treats fuzzy temporal information efficiently. It can be integrated into applications for diagnosis. This is especially important in areas like Intensive Care Units, where patients' data are handled by a temporal database. FuzzyTime uses a structure which consists of three levels of abstraction. The upper layer is the user interface, where a translator transforms the expressions introduced by the user into temporal relations between temporal entities (points and intervals). The semantics of a user’s expressions are analyzed and stored in the intermediate layer, or temporal world. Finally, the bottom layer is based on the FTCN model.
fundest is a C/C++ library for robust, non-linear fundamental matrix estimation. The fundamental matrix is a singular 3x3 matrix which relates corresponding points in two views according to the epipolar constraint. fundest computes an estimate which minimizes an appropriate non-linear cost function defined on matching points (currently either Sampson error or symmetric distance of points from their epipolar lines) and includes robust regression techniques for coping with outliers (i.e., mismatched point pairs).
GenFoo is a general Fokker-Planck solver for models of arbitrary dimensionality. It contains three backend solvers, a delta-f Monte Carlo, a standard Monte Carlo, and a Finite Element solver. The key property of the GenFoo package is that physics are separated from numerics by runtime loading of the Fokker-Planck coefficients, which enable solutions of a large class of Fokker-Planck models.
yacts, yet another continuous time simulator, uses J+ to interpret scripts, defining systems of ordinary differential equations, which it solves. J+ is a functional non-imperative simulation language with lazy evaluation, based on the J programming language, a dialect of APL. A program in J+ is a collection of (possibly functional) J assignment statements, just like a set of formulae on a sheet of paper. The interpreter, implemented as a software library, knows the interdependencies between these formulae and is able to compute any of the defined quantities with minimal effort, keeping track of the values which were already computed. The driver program (such as yacts) may ask the interpreter to compute certain quantities and set the values for others (propagating the changes to dependents).
h5tools provides third-party tools for working with data where the underlying storage object is HDF5. The toolkit currently has two utilities in it: The HDF5 NeXus writer API is a set of functions which allows writing data in the NeXus data format, using only HDF5 function calls. H5merge will merge any two HDF5 or NetCDF4 files.
The Common Pipeline Library provides a highly robust set of functions for manipulating signals and images. It is primarily intended for the building of VLT instrument pipelines, but is also useful for generic data handling. It includes a number of useful low-level data types, medium-level data access methods, standard implementations of commonly-used signal processing and data reduction tasks, and dynamic loading of "recipes" for data processing.
WCSLIB is a C library, supplied with a full set of Fortran wrappers, which implements the "World Coordinate System" (WCS) standard in FITS (Flexible Image Transport System). It also includes a PGPLOT-based routine, PGSBOX, for drawing general curvilinear coordinate graticules, and a number of utility programs. The FITS "World Coordinate System" (WCS) convention defines keywords and usage which provide descriptions of astronomical coordinate systems in a FITS image header.
iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored for when some molecules are present only in very low copy numbers as is the case in living cells. The SBML-based software computes statistical measures such as means and standard deviations of concentrations within a given accuracy using the analytical system size expansion. The result of iNA’s analysis can be tested against the computationally much more expensive stochastic simulation algorithm.