JReferences is a program written in Java for managing bibliographic references in the BibTeXML format. Storage is done in a binary file database or, optionally, in a MySQL database. A PHP Web frontend is available. It can input BibTex, RIS, BibTeXML, and DocBook formated references.
Rute (Rute Users Tutorial and Exposition) is a book on GNU/Linux that aims to be the definitive guide for new users as well as sufficing as training course material, covering both the RHCE and LPI requirements. It covers essential theory to UNIX as well as giving practical tutorials on all fundamental aspects of Unix administration, from basic commands, the theory of TCP/IP, the Linux filesystem, through to configuration of mail, DNS, and other servers, through hardware configuration and package management. It is not Unix-specific but tends to give examples suited to Debian and RedHat-like systems. Rute comes in HTML and PDF formats.
e3 is a full-screen, user-friendly text editor with an interface similar to that of either WordStar, Emacs, Pico, Nedit, or vi. It's heavily optimized for size and independent of libc or any other libraries, making it useful for mini-Linux distributions and rescue disks. The assembler version supports Linux, FreeBSD, OpenBSD, NetBSD, Win9x, QNX, Atheos, BeOS, ELKS, and DOS. There is also a separately distributed version written in C which supports some other Unix versions and CygWin. It is also possible to use regular expressions by using child processes like sed. e3 has a built in arithmetic calculator.
Eev.el is a simple Emacs Lisp library that lets you treat portions of a text file as shell commands, chunks of code for programming languages or as hyperlinks; its intention is to let people record into plain ASCII files their interaction with the computer, and to let them edit and play back any block of code in those files easily. The hyperlinks can point to places in manpages, Info pages and text or HTML files, and they are seen as comments by all programming languages; using them you can place pointers to all relevant online sources of information inside the code.