VMD (Visual Molecular Dynamics) is designed for the visualization and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer. VMD uses OpenGL and OpenGL Programmable Shading Language for high performance rendering of large structures.
The Visualization ToolKit (VTK) is an object oriented software system for 3D computer graphics, image processing, and visualization. VTK includes a textbook, a C++ class library, and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including scalar, vector, tensor, texture, and volumetric methods. It also supports advanced modeling techniques like implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation. Moreover, dozens of imaging algorithms have been integrated into the system. This allows mixing 2D imaging / 3D graphics algorithms and data.
MCS MyRoute helps diagnose connectivity problems with detailed network routing discovery and analysis, providing visibility to poor-performing networks and devices. It includes a Java applet that enables remote users to easily test connections from the MyRoute server. Essential diagnostic tools including traceroute, ping, reverse DNS, and whois are combined into a single graphical interface that analyzes Internet connections, reporting quick and essential data points for finding connectivity problems. An IP location database identifies the geographical location of IP addresses and Web servers, showing the path of an Internet connection on a global map.
MayaVi is a free, cross platform, easy-to-use scientific data visualizer. It provides a powerful GUI to ease the visualization process. It is written in Python and uses the Visualization Toolkit (VTK) for the graphics. MayaVi can be scripted from other Python programs and also from the interactive Python interpreter. MayaVi includes the VTK Pipeline browser. The VTK Pipeline browser is a Python module (vtkPipeline) that enables one to view and configure the objects in the VTK pipeline graphically with a Tkinter-based GUI. The browser should work for any Python script that uses VTK. MayaVi also provides classes to pickle a VTK object and a simple class documentation browser.
Waterfall is a visualization plugin for XMMS. It's yet another spectrum analyzer, but it presents the data better, which makes it more interesting to watch. Most analyzers show a changing 2D bar graph of frequency vs. intensity. This one shows a scrolling 4D plot of frequency, time, intensity, and a configurable fourth variable mapped to hue.
Weka is a collection of machine learning algorithms for solving real-world data mining problems. It is written in Java and runs on almost any platform. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka is also well-suited for developing new machine learning schemes. The development version contains a GUI with visualization tools and direct database access.
WorldStation is a Java-based control panel to control the Ten-Tec DSP RX-320 shortwave receiver. The RX-320 is a "black box" radio which has no front-panel and is controlled via your PC's serial port. With an appropriate antenna, the RX-320 will allow you to listen to thousands of broadcasts from around the world. WorldStation features integrated Xbase frequency database support and advanced scanning to allow the user to visualize the radio spectrum.
XMPI is an X/Motif based GUI for running, debugging, and visualizing MPI (Message Passing Interface) programs. Extensive MPI information is extracted from a running application on demand, or from a cummulative log of communication. Both sources are tightly integrated with an application overview window and any number of single process focus windows.
Xoscope (or oscope) is a digital oscilloscope using input from a sound card or EsounD and/or a ProbeScope/osziFOX. Its features include 8 simultaneous signal displays, 1 us/div to 2 s/div time scale, built-in and external math functions including inverse, sum, diff, avg, xy, and FFT, 23 memory buffers, 5 automatic measurements, and file save/load.